What type of interaction does LEU83 form with the ligand?

Question

BlackTom AI · Accepted Answer

The provided data presents the question: 'What type of interaction does LEU83 form with the ligand?' and indicates the correct answer as 'Hydrogen bond'. However, the list of answer options is empty, so there are no other choices to evaluate or compare.

Given that a hydrogen bond is cited as the correct interaction, consider what this implies in a typical protein–ligand context. Hydrogen bonds involve a donor and an acceptor atom with a partial charge difference, often arising from backbone amide groups (N-H or C=O) or side chains that have electronegative atoms capable of sharing hydrogen. In the case of LEU83 (leucine), the side chain is a nonpolar aliphatic group that generally does not serve as a hydrogen-bond donor or acceptor. Therefore, if LEU83 is participating in a hydrogen bond with the ligand, it would likely involve the protein backbone atoms (e.g., the amide N–H of the LEU residue or the carbonyl oxygen) rather than the leucine side chain itself. This nuance is important: while the question states a hydrogen bond with LEU83, the most plausible hydrogen-bond–forming partners would be the backbone atoms rather than the leucine side chain.

If we were to imagine possible alternative options that could appear for this kind of question, common choices might include:
- Hydrophobic interaction: would be more typical for the leucine side chain, which is nonpolar and tends to engage in van der Waals contacts rather than hydrogen bonding.
- Ionic interaction: leucine lacks charged groups, so this would be incorrect for LEU83.
- Salt bridge: also unlikely for a nonpolar residue like leucine.
- Covalent bond: a standard LEU side chain does not form covalent bonds with ligands in typical non-covalent binding analyses.

In the absence of the actual option list, we can reason that labeling the interaction as a hydrogen bond emphasizes a directional, specific interaction typically involving backbone atoms or heteroatoms on the ligand, rather than generic hydrophobic contacts. If the real test options included alternatives such as hydrophobic interaction or van der Waals contact, those would usually be argued against given the stated correct answer, depending on the observed contacts in the structure.

In summary, without the provided options to compare, detailed justification for why hydrogen bonding is correct versus other choices cannot be fully demonstrated here. The key takeaway is recognizing that leucine itself is not a strong hydrogen-bond–forming side chain, so a hydrogen bond with LEU83 would likely involve backbone atoms or specific ligand functionalities capable of accepting or donating hydrogen bonds, rather than side-chain-mediated hydrogen bonding.

2254 BIOSC 1544 SEC1000 Homework: BINANA

What type of interaction does LEU83 form with the ligand?

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